The second version of the Yusei Fudo Duel Disk had a number of adjustments made to it, addressing a few of the issues that made the previous Duel Disk impractical for gaming.
The Deck Zone now holds 40 sleeved cards, whereas the previous version could not accommodate sleeved cards at all. The Graveyard holds 30.
A space for cards "Removed from Play" and an "Extra Deck Zone" was included, along with a bottom covering along the arm blade. The flip action of the 2009 version was reversed, which follows the canonical Yu-Gi-Oh designs.