This is how I've initially divided the components into the tuck boxes, for some value of association. Anyone else develop a scheme?
On the Causes of the Properties of the Elements (Purple): The 48 Alchemical Compound reagent cards.
The Five Books of Mystery (Grey): The 48 Mystic Component reagent cards.
The Necessity of the Art (dark Brown): The 50 Trade skill cards.
The Emerald Table (Green): The 48 Effect cards.
The Philosophical Summary (light Blue): The 29 Research cards (includes 3 KS cards)
The New Light (light Brown): The 24 Attempt Transmutation Action cards, the Research and Reagent underlay cards, the Albedo, Putrefactio, and Albedo cards (Total: 44)
On The Magistery of Hermes (Black): The 21 Discovery cards and the 12 Alchemist character cards (Total: 33)
On the Transmutation into Gold (Red): The 52 gold and 26 experience tokens. (Total: 78 cardboard tokens)
I left the wood tokens in the bags they came in.