Warlord beats Troll, Troll beats Elf, Elf beats Water Sprite, and basically everything else beats Enchanted Bunny.
Spacing is a bit weird, but I just placed things wherever. I think I have the Faction tiles in one, player/plastic pieces in another, cards in the third, and everything else in the fourth. The cardboard punchouts are just thrown in there somewhere. It's not a tight fit, so I guess it wasn't a concern.
That is exactly what I did too but was curious if anyone else had done anything different.