See the person next to you? Kill! Kill!!! KILLL!!!!
I'm your baby! Can you feel it?
I think you start with the market and work your way down. I usually go market >> Travel >> Harvest >> Guild Hall >> Family >> Church >> Crafts.
I'm assuming you are using Tavern so I would fit tavern between Family and Church. But I'm sure you can do it the other way around also, as long as you are consistent to avoid being accused of favouring the action you are wanting to do that round
If you're playing with 5 players, remember to include the extra cubes that come with the Inn expansion, and there should be enough.
If not, all you can do is come up with a solution that your group is happy with. Pedro's suggestion is one possibility. I'd be inclined to just give each player a piece of paper and write on it how many cubes they have of each colour, so they can hand back as many as are needed (as suggested in the other thread).